CDS

Accession Number TCMCG016C28728
gbkey CDS
Protein Id OMO50471.1
Location complement(join(23368..23454,23605..23673,23760..23826,23963..24030,24167..24277,24379..24436,24570..24606,25202..25295,25588..25653,25752..25816,25947..26091,26205..26270,27466..27615,28265..28310,28387..28463,28556..28624,28710..28793,28927..28970,29118..29258,29359..29557,29761..29889,30893..30976,31138..31251,31363..31470,31547..31642,31872..31937,32412..32513,32651..32746,33025..33108,33857..33974,34055..34131,34741..34929,35057..35304,35391..35541,35992..36108,36556..36663,37008..37107,37386..37441,38057..38089))
Organism Corchorus capsularis
locus_tag CCACVL1_30424

Protein

Length 1272aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01016145.1
Definition Patched [Corchorus capsularis]
Locus_tag CCACVL1_30424

EGGNOG-MAPPER Annotation

COG_category I
Description Niemann-Pick C1
KEGG_TC 2.A.6.6
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko02000        [VIEW IN KEGG]
KEGG_ko ko:K12385        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04142        [VIEW IN KEGG]
ko04979        [VIEW IN KEGG]
map04142        [VIEW IN KEGG]
map04979        [VIEW IN KEGG]
GOs GO:0000323        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005496        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005576        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005635        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005764        [VIEW IN EMBL-EBI]
GO:0005773        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0005887        [VIEW IN EMBL-EBI]
GO:0006082        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006486        [VIEW IN EMBL-EBI]
GO:0006629        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006869        [VIEW IN EMBL-EBI]
GO:0007034        [VIEW IN EMBL-EBI]
GO:0007041        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008202        [VIEW IN EMBL-EBI]
GO:0008206        [VIEW IN EMBL-EBI]
GO:0008289        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009100        [VIEW IN EMBL-EBI]
GO:0009101        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010876        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0015485        [VIEW IN EMBL-EBI]
GO:0015850        [VIEW IN EMBL-EBI]
GO:0015918        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016021        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019752        [VIEW IN EMBL-EBI]
GO:0030301        [VIEW IN EMBL-EBI]
GO:0031224        [VIEW IN EMBL-EBI]
GO:0031226        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0032787        [VIEW IN EMBL-EBI]
GO:0032934        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0036094        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042592        [VIEW IN EMBL-EBI]
GO:0042632        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043178        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043413        [VIEW IN EMBL-EBI]
GO:0043436        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044281        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044425        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044459        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0048471        [VIEW IN EMBL-EBI]
GO:0048878        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0055088        [VIEW IN EMBL-EBI]
GO:0055092        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070085        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901135        [VIEW IN EMBL-EBI]
GO:1901137        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901566        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901615        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAAATGGACTTCTTCCGTCGTCGGAGAATGGTTTTGTTTATTGTTGTACCAACGGTGGTTGCGCAGACGACAAATGATGAATTAAGTGAGAGACATTCTGAAGGGTATTGTGCAATGTATGACATCTGTGGAACTCGAAGTGATGGAAAAGTATTAAACTGTCCTGTTGGTTCTCCAGCTGTAAAGCCAGACGAGTTACTTTCAGCAAAAATTCAAAGTTTGTGCCCGACAATTACTGGAAATGTTTGTTGTACAGAAGCTCAATTTGACACACTACGGGCGCAAGTTCAGCAAGCGATTCCTTTCCTTGTAGGCTGTCCAGCATGCTTGAGAAATTTTTTGAATCTGTTCTGTGAGCTTTCCTGCTCTCCAAACCAAAGTTTGTTCATCAATGTGACAACAGTATCCAAGGTTAAAAACAACTTGACTGTGGATGGAATTGACTTCTACATAACTGATGCATTTGGTGAAGGGTTGTATGAATCATGCAAAGATGTCAAGTTTGGTACCATGAATACTCGTGCTCTGGAATTTATTGGTTTGGGTGCTAAAAACTTTAAAGAGTGGTTTGCTTTTATTGGTAGGCGAGCACTACCTAACCTGCCAGGTTCACCTTATGCCATTCAATTCAAGCCATCTGCTCCTGAATCATCTGGGATGAAACCAATGAATGTATCTACCTATTCATGTGGAGATGTTTCACTGGGGTGTTCTTGTGGTGATTGCCCTGCATCTCCTGTCTGCTCCATTACAGCTCAACCTCCTTCCCATAAAGGGGCTACATGTTCAGTTCGAATGGGATCTCTCAAGCCCAGATGTGTCGACTTAGCTTTAGCAATCCTCTATATTGTATTGGTTTCTATGTTTTTCGGATGGGGTTTATTTCATCGGACAAGAAAAAGAAGCAGGTCTTTTCGTATGAAACCATTTTTGGACACAGCGGATGGTGGTGAATCTCATTCTGTTCATAGGCAAAAAGTCGAGAACCTCCCCATGCAGAGGCTACAAGATGCTAATCAAACTAGCACTGGGGTTCAACTTTCTATTGTGCAAGGATACATGTCAAACTTTTTCAGGAAATATGGACAATGGGTTGCTAGAAATCCGACCCTCGTATTGAGTTTGTCAGTGGGAATGATTCTTCTACTTTGCTTGGGTCTAATCCGTTTCAAGGTGGAAACACGACCTGAGAAGCTATGGGTGGGACCTGGGAGTAAAGCCGCAGAAGAGAAGCAATTTTTTGACAGCCATCTAGCTCCTTTTTACAGAATTGAGCAGCTGGTAATAGCAACAGTTCCTGATGCCTTGCATGATAAACCACCAAGCATTCTGACAGAGGAAAATATTAACTTATTATTTGAAATTCAAAAGAAGATTGATGGAATCCGAGCAAATTATTCTGGCTCAATGATATCTTTGACAGATATTTGCATGAAGCCGATGGGGCAGGATTGTGCCACACAAAGTGTTCTACAGTACTTCAAAATGGATCCGACTTATGATGCTGATGATCGTGTGGATCACATGAAGTATTGTTTTCAGCATTATACCTCTGCAGACTCATGTATGAGTGCTTTTAAAGCCCCACTAGATCCAAGCACTGTACTGGGAGGTTTCTCTGGCAGCAATTATACTGAGGCCTCTGCATTTATAGTAACTTATCCAGTAAATAATGCTATTGAAAGCGAAGGGAATAAAACTGAAAAGGCTGTTGCTTGGGAGAAGGCCTTTATTCAATTAGCAAAGGATGAGTTGGTGCCTATGGTTCAATCAAGAAATTTGACATTTTCTTTTTCATCGGAAAGCTCCATTGAGGAAGAGTTAAAAAGAGAAAGCACTGCGGATGCCATAACCATATTGATAAGCTATCTTGTGATGTTCGCTTACATATCTCTAACTTTAGGTGATACACCCCGGTTATCGTCCTTTTACATTTCATCAAAGGTATTGCTTGGTCTTTCTGGTGTTATTCTTGTCATGCTCTCGGTTTTGGGATCAGTAGGATTTTTCAGTGCCATTGGAGTAAAATCTACTCTAATCATAATGGAAGTTATTCCTTTTCTTGTTCTTGCGGTTGGGGTGGATAATATGTGTATACTGGTGCATGCTGTTAAGAGGCAACCTTTGGATTTACCTCTAGAAGGAAGAATAAGCAATGCACTTGTGGAAGTTGGACCATCCATAACACTTGCTAGTCTAGCTGAGGTTTTAGCTTTTGCGGTTGGAAGTTTCATTCCTATGCCCGCCTGCCGCGTGTTCTCTATGTTTGCAGCTCTTGCCGTCCTGTTGGACTTCCTTCTGCAAGTTACTGCTTTTGTCTCTCTGATAGTTTTTGACTTTATGCGAGCTGAGGATAGAAGAATTGATTGTTTTCCATGCATAAAAGTATCTTCAACGCACGAGTCTGAGAAAGGCATCGGTGGGAGAAAGCCTGGGTTGTTGGCTCGGTATATGAAGGAGGTGCATGCACCCATTCTCAGTCTTTGGGGAGTGAAAATCATAATTGTTTCGACTTTTGTCGCTTTTACATTGGCTAGCATTGCATTGTCCACTCGAATTGATCCTGGTCTGGAACAAAAGATTGTTCTTCCACAAGACTCATATCTTCAGGGCTATTTCAATAACATTTCAGAATATCTCAGAATTGGACCACCACTGTATTTTGTTGTGAAGAACTATAATTATAGATATTTAACTGGTCAAAAGCATGAAGAGACATGCACTTTGCTTCTGATTGCAAGAGCATCCTCGACACCAGAATCAAGCTATATTGCTAAGCCAGCTGCTTCATGGCTTGATGATTTTCTTGTCTGGATATCTCCAGAAGCATTTGGTTGCTGTCGGAAATTTACTAATGGGACCTATTGTCCTCCTGATGACCAGCCACCTTGCTGCTCTGTGAATGATGGTGCCTGTGGGATGAGTGCAGTGTGCAAAGATTGCACCACGTGCTTCCGCCATTCAGATTTAGACAATGACCGTCCATCTACCGCCCAATTTAAGGAGAAACTTCCATGGTTCCTTGATGCTTTGCCCTCTGCAGATTGTTCCAAGGGTGGACATGGTGCCTACACTACCAGTGTGGAGCTGAATGGCTATGAAAATGGTGTTATTCAGGCATCATCCTTCCGTACCTACCATACACCCCTCAATAAGCAGGTTGATTATGTTAACTCCATGAGGGCTGCTCGAGAATTTTCTTCAAGGGTTTCAGACTCTTTAAAGATGGAGATCTTTCCATATTCCGTGTTTTATATGTTTTTTGAGCAATACCTTGATATATGGAAGACTGCACTGATCAATCTTGCAATAGCTATAGGTGCCGTATTTATAGTTTGTTTAGTCATTACATGCAGTTTTTGGAGCTCAGCAATCATTTTGCTGGTTTTGGCAATGATTGTCGTCGATCTTATGGGCGTGATGGCAATTCTAGGAATTCAACTGAATGCAGTCTCTGTTGTTAATCTTGTTATGGCAGTAGGCATTGCTGTTGAGTTCTGCGTGCATATAACGCATGCTTTTTCAGTGAGCAGTGGAAGTAAAGATGAACGAGTAAAGGAGGCTCTTGGTACTATGGGAGCGTCCGTTTTCAGTGGAATCACACTGACAAAGCTGGTTGGGGTGCTGGTTCTTTGCTTCTCAAGGACAGAAGTGTTTGTGGTCTATTACTTCCAGATGTACCTAGCATTAGTCCTTCTGGGTTTCTTACACGGGCTTGTATTTTTGCCGGTGGTTTTGAGCATGTTTGGTCCACCATCAAGATGCGTGCAGGTTGAGAGGCAAGAAGAACGGCCTTCAGTTTCATCACAGCCCTAG
Protein:  
MEMDFFRRRRMVLFIVVPTVVAQTTNDELSERHSEGYCAMYDICGTRSDGKVLNCPVGSPAVKPDELLSAKIQSLCPTITGNVCCTEAQFDTLRAQVQQAIPFLVGCPACLRNFLNLFCELSCSPNQSLFINVTTVSKVKNNLTVDGIDFYITDAFGEGLYESCKDVKFGTMNTRALEFIGLGAKNFKEWFAFIGRRALPNLPGSPYAIQFKPSAPESSGMKPMNVSTYSCGDVSLGCSCGDCPASPVCSITAQPPSHKGATCSVRMGSLKPRCVDLALAILYIVLVSMFFGWGLFHRTRKRSRSFRMKPFLDTADGGESHSVHRQKVENLPMQRLQDANQTSTGVQLSIVQGYMSNFFRKYGQWVARNPTLVLSLSVGMILLLCLGLIRFKVETRPEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLVIATVPDALHDKPPSILTEENINLLFEIQKKIDGIRANYSGSMISLTDICMKPMGQDCATQSVLQYFKMDPTYDADDRVDHMKYCFQHYTSADSCMSAFKAPLDPSTVLGGFSGSNYTEASAFIVTYPVNNAIESEGNKTEKAVAWEKAFIQLAKDELVPMVQSRNLTFSFSSESSIEEELKRESTADAITILISYLVMFAYISLTLGDTPRLSSFYISSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQPLDLPLEGRISNALVEVGPSITLASLAEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQVTAFVSLIVFDFMRAEDRRIDCFPCIKVSSTHESEKGIGGRKPGLLARYMKEVHAPILSLWGVKIIIVSTFVAFTLASIALSTRIDPGLEQKIVLPQDSYLQGYFNNISEYLRIGPPLYFVVKNYNYRYLTGQKHEETCTLLLIARASSTPESSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGTYCPPDDQPPCCSVNDGACGMSAVCKDCTTCFRHSDLDNDRPSTAQFKEKLPWFLDALPSADCSKGGHGAYTTSVELNGYENGVIQASSFRTYHTPLNKQVDYVNSMRAAREFSSRVSDSLKMEIFPYSVFYMFFEQYLDIWKTALINLAIAIGAVFIVCLVITCSFWSSAIILLVLAMIVVDLMGVMAILGIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGSKDERVKEALGTMGASVFSGITLTKLVGVLVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSMFGPPSRCVQVERQEERPSVSSQP